PH01000287G0640's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G00450 : 0.00E+00
Blast annotation: RNA polymerase II transcription mediators
2.Location
Scaffold: PH01000287
Strand: +
| Region | Start | End |
| gene | 406521 | 412141 |
| mRNA | 406521 | 412141 |
| exon | 406521 | 408359 |
| exon | 409591 | 412141 |
| CDS | 408274 | 408359 |
| CDS | 409591 | 412129 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000068 | cellular protein modification process, ubiquitin-protein ligase activity, Ubiquitin_mediated_proteolysis binding, intracellular, protein binding, CE8 Carbohydrate_Esterases GH28 Glycoside_Hydrolases Alfin-like Transcription_Regulator(from iTAK) SWI/SNF-SWI3 Transcription_Regulator(from iTAK) TORC1_complex |
| coexpression network | CFinderM000912 | intracellular, SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Ribosome translation, cellular protein modification process, structural constituent of ribosome, Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001175 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.