PH01000287G0650's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G00450 : 5.20E-32
Blast annotation: RNA polymerase II transcription mediators
2.Location
Scaffold: PH01000287
Strand: +
| Region | Start | End |
| gene | 412958 | 415195 |
| mRNA | 412958 | 415195 |
| exon | 412958 | 413327 |
| exon | 413883 | 415195 |
| CDS | 413064 | 413327 |
| CDS | 413883 | 414320 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001138 | AP-3_adaptor_complex ceramide metabolic process, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, Sphingolipid_metabolism phosphate-containing compound metabolic process, inorganic diphosphatase activity, protein transporter activity, Oxidative_phosphorylation membrane coat, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.