PH01000287G0840's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G47570 : 3.60E-46
Blast annotation: -
2.Location
Scaffold: PH01000287
Strand: +
| Region | Start | End |
| gene | 535139 | 537540 |
| mRNA | 535139 | 537540 |
| exon | 535139 | 536093 |
| exon | 536177 | 536263 |
| exon | 536381 | 536476 |
| exon | 537230 | 537540 |
| CDS | 535956 | 536093 |
| CDS | 536177 | 536263 |
| CDS | 536381 | 536476 |
| CDS | 537230 | 537379 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001155 | UDP-glucose:glycoprotein_glucosyltransferase_activity nuclear pore, binding, protein transporter activity, Proteasome protein glycosylation, |
| coexpression network | CFinderM001662 | myosin complex, motor activity, Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis Arp2/3_protein_complex cytoskeleton, Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization, ATP binding, ubiquitin thiolesterase activity, |
| coexpression network | CFinderM001868 | Rab GTPase activator activity, mitochondrial respiratory chain complex IV, cytochrome-c oxidase activity, mitochondrial inner membrane, Oxidative_phosphorylation RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.