Annotation of co-expression genes

PH01000287G1230's details annotation

1.Annotation

ICBR annotation: ARABIDILLO-1, putative, expressed

Blast result AT2G44900 : 0.00E+00
Blast annotation: ARABIDILLO-1

2.Location

Scaffold: PH01000287
Strand: +

RegionStartEnd
gene809046820431
mRNA809046820431
exon809046811042
exon811126811287
exon811370811450
exon811558811689
exon812436812563
exon812692812779
exon813192813286
exon814960815023
exon815416815591
exon817340817564
exon818616818700
exon819536820431
CDS809723811042
CDS811126811287
CDS811370811450
CDS811558811689
CDS812436812563
CDS812692812779
CDS813192813286
CDS814960815023
CDS815416815591
CDS817340817564
CDS818616818700
CDS819536819724

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000999exocytosis,
SBP Transcription_Regulator(from PlantTFDB)
exocyst,
Protein_processing_in_endoplasmic_reticulum

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12937.6F-box-like2773
PF00514.22Arm494533
PF00514.22Arm543575
PF00514.22Arm580619
PF00514.22Arm621663
PF00514.22Arm667704

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005488binding
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.