PH01000288G0710's details annotation
1.Annotation
ICBR annotation: trp repressor/replication initiator, putative, expressed
Blast result AT3G63270 : 6.00E-132
Blast annotation: -
2.Location
Scaffold: PH01000288
Strand: +
| Region | Start | End |
| gene | 505542 | 515544 |
| mRNA | 505542 | 515544 |
| exon | 505542 | 506591 |
| exon | 506803 | 507129 |
| exon | 507189 | 508331 |
| exon | 508549 | 509787 |
| exon | 509960 | 510948 |
| exon | 511157 | 511252 |
| exon | 511928 | 512109 |
| exon | 512717 | 512750 |
| exon | 513558 | 515544 |
| CDS | 506429 | 506591 |
| CDS | 506803 | 507129 |
| CDS | 507189 | 508331 |
| CDS | 508549 | 509787 |
| CDS | 509960 | 510948 |
| CDS | 511157 | 511252 |
| CDS | 511928 | 512109 |
| CDS | 512717 | 512750 |
| CDS | 513558 | 514343 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13359.5 | DDE_Tnp_4 | 261 | 425 |
| PF13359.5 | DDE_Tnp_4 | 674 | 838 |
| PF13359.5 | DDE_Tnp_4 | 1087 | 1251 |
| PF14303.5 | NAM-associated | 1486 | 1633 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.