PH01000289G0540's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase HT1, putative, expressed
Blast result AT2G24360 : 2.20E-43
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000289
Strand: -
| Region | Start | End |
| gene | 371890 | 375407 |
| mRNA | 371890 | 375407 |
| exon | 371890 | 372902 |
| exon | 374426 | 375407 |
| CDS | 372563 | 372902 |
| CDS | 374426 | 374496 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000520 | ER_membrane_protein_complex GT96 GlycosylTransferases TKL-Pl-4 (from iTAK) |
| coexpression network | CFinderM000933 | TKL-Pl-4 (from iTAK) Others Transcription_Regulator(from iTAK) response to heat, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001290 | Protein_processing_in_endoplasmic_reticulum AGC_NDR (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 24 | 109 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.