PH01000290G0020's details annotation
1.Annotation
ICBR annotation: methyladenine glycosylase, putative, expressed
Blast result AT1G13635 : 5.40E-79
Blast annotation: DNA glycosylase superfamily protein
2.Location
Scaffold: PH01000290
Strand: +
| Region | Start | End |
| gene | 10156 | 13090 |
| mRNA | 10156 | 13090 |
| exon | 10156 | 10639 |
| exon | 11192 | 11249 |
| exon | 11352 | 11435 |
| exon | 11554 | 11656 |
| exon | 11946 | 13090 |
| CDS | 10234 | 10639 |
| CDS | 11192 | 11249 |
| CDS | 11352 | 11435 |
| CDS | 11554 | 11656 |
| CDS | 11946 | 12236 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03352.12 | Adenine_glyco | 134 | 307 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Base excision repair | DNA-3-methyladenine glycosylase I [EC:3.2.2.20] | ko03410 | K01246 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006281 | DNA repair |
| GO:0006284 | base-excision repair |
| GO:0008725 | DNA-3-methyladenine glycosylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.