Annotation of co-expression genes

PH01000291G0100's details annotation

1.Annotation

ICBR annotation: C2 domain containing protein, putative, expressed

Blast result AT5G07850 : 6.40E-46
Blast annotation: HXXXD-type acyl-transferase family protein

2.Location

Scaffold: PH01000291
Strand: -

RegionStartEnd
gene7932086419
mRNA7932086419
exon7932079930
exon8065880964
exon8125981360
exon8213182161
exon8229382365
exon8268182747
exon8320883607
exon8427284934
exon8524786419
CDS7986279930
CDS8065880964
CDS8125981360
CDS8213182161
CDS8229382365
CDS8268182747
CDS8320883607
CDS8427284934
CDS8524786378

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000064D-amino acid catabolic process,
GT77 GlycosylTransferases
endoplasmic reticulum,
response to stress,
NAC Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02458.14Transferase18110
PF02458.14Transferase132339
PF02580.15Tyr_Deacylase661747

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005737cytoplasm
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups
GO:0016788hydrolase activity, acting on ester bonds
GO:0019478D-amino acid catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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