PH01000291G0880's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G28130 : 8.80E-80
Blast annotation: -
2.Location
Scaffold: PH01000291
Strand: +
| Region | Start | End |
| gene | 564114 | 573022 |
| mRNA | 564114 | 573022 |
| exon | 564114 | 565144 |
| exon | 565741 | 565924 |
| exon | 566020 | 566082 |
| exon | 566193 | 566295 |
| exon | 566525 | 566629 |
| exon | 566713 | 566786 |
| exon | 566867 | 566996 |
| exon | 567182 | 567254 |
| exon | 570458 | 570649 |
| exon | 571002 | 571122 |
| exon | 571197 | 571421 |
| exon | 571620 | 571715 |
| exon | 572063 | 573022 |
| CDS | 564999 | 565144 |
| CDS | 565741 | 565924 |
| CDS | 566020 | 566082 |
| CDS | 566193 | 566295 |
| CDS | 566525 | 566629 |
| CDS | 566713 | 566786 |
| CDS | 566867 | 566996 |
| CDS | 567182 | 567254 |
| CDS | 570458 | 570649 |
| CDS | 571002 | 571122 |
| CDS | 571197 | 571421 |
| CDS | 571620 | 571715 |
| CDS | 572063 | 572107 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.