PH01000291G1080's details annotation
1.Annotation
ICBR annotation: DNA-binding protein-related, putative, expressed
Blast result AT4G28440 : 1.20E-48
Blast annotation: Nucleic acid-binding, OB-fold-like protein
2.Location
Scaffold: PH01000291
Strand: -
| Region | Start | End |
| gene | 721981 | 725079 |
| mRNA | 721981 | 725079 |
| exon | 721981 | 722396 |
| exon | 723695 | 725079 |
| CDS | 722209 | 722396 |
| CDS | 723695 | 723941 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| DNA replication | replication factor A1 | ko03030 | K07466 |
| Nucleotide excision repair | replication factor A1 | ko03420 | K07466 |
| Mismatch repair | replication factor A1 | ko03430 | K07466 |
| Homologous recombination | replication factor A1 | ko03440 | K07466 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.