Annotation of co-expression genes

PH01000291G1250's details annotation

1.Annotation

ICBR annotation: NIN, putative, expressed

Blast result AT4G24020 : 0.00E+00
Blast annotation: NIN like protein 7

2.Location

Scaffold: PH01000291
Strand: -

RegionStartEnd
gene834808842862
mRNA834808842862
exon834808836948
exon838405839347
exon839436839483
exon839663840222
exon841377842862
CDS835981836948
CDS838405839347
CDS839436839483
CDS839663840222
CDS841377841668

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001524diphosphomevalonate decarboxylase activity,
Peroxisome
6-phosphofructokinase complex,
Terpenoid_backbone_biosynthesis
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
6-phosphofructokinase activity,
GRAS Transcription_Regulator(from PlantTFDB)
isoprenoid biosynthetic process,
glycolysis,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)RWP-RK
Transcription_Regulator(from PlantTFDB)Nin-like

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02042.14RWP-RK592640
PF00564.23PB1842923

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.