PH01000293G0380's details annotation
1.Annotation
ICBR annotation: ion channel DMI1, chloroplast precursor, putative, expressed
Blast result AT5G49960 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01000293
Strand: +
| Region | Start | End |
| gene | 228824 | 235885 |
| mRNA | 228824 | 235885 |
| exon | 228824 | 229931 |
| exon | 230044 | 230112 |
| exon | 230207 | 230815 |
| exon | 231382 | 231615 |
| exon | 231756 | 231815 |
| exon | 231917 | 232120 |
| exon | 232240 | 232488 |
| exon | 232625 | 232723 |
| exon | 232807 | 233001 |
| exon | 233453 | 233545 |
| exon | 233694 | 233867 |
| exon | 234077 | 234114 |
| exon | 234939 | 235140 |
| exon | 235327 | 235885 |
| CDS | 229362 | 229931 |
| CDS | 230044 | 230112 |
| CDS | 230207 | 230815 |
| CDS | 231382 | 231615 |
| CDS | 231756 | 231815 |
| CDS | 231917 | 232120 |
| CDS | 232240 | 232488 |
| CDS | 232625 | 232723 |
| CDS | 232807 | 233001 |
| CDS | 233453 | 233545 |
| CDS | 233694 | 233867 |
| CDS | 234077 | 234114 |
| CDS | 234939 | 235140 |
| CDS | 235327 | 235545 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000442 | GATA Transcription_Regulator(from PlantTFDB) C2C2-GATA Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VII-1 (from iTAK) positive_regulation_of_transcription,_DNA-templated |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06241.11 | Castor_Poll_mid | 564 | 661 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.