PH01000293G0540's details annotation
1.Annotation
ICBR annotation: HEAT, putative, expressed
Blast result AT1G77600 : 3.40E-64
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000293
Strand: +
| Region | Start | End |
| gene | 318502 | 325496 |
| mRNA | 318502 | 325496 |
| exon | 318502 | 318775 |
| exon | 320021 | 320218 |
| exon | 320433 | 320614 |
| exon | 322809 | 322929 |
| exon | 323358 | 323574 |
| exon | 323663 | 323808 |
| exon | 323873 | 324030 |
| exon | 324108 | 324257 |
| exon | 324714 | 325496 |
| CDS | 318683 | 318775 |
| CDS | 320021 | 320218 |
| CDS | 320433 | 320614 |
| CDS | 322809 | 322929 |
| CDS | 323358 | 323574 |
| CDS | 323663 | 323808 |
| CDS | 323873 | 324030 |
| CDS | 324108 | 324257 |
| CDS | 324714 | 324828 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.