PH01000293G1240's details annotation
1.Annotation
ICBR annotation: sterol 3-beta-glucosyltransferase, putative, expressed
Blast result AT1G43620 : 3.00E-59
Blast annotation: UDP-Glycosyltransferase superfamily protein
2.Location
Scaffold: PH01000293
Strand: -
| Region | Start | End |
| gene | 799373 | 803920 |
| mRNA | 799373 | 803920 |
| exon | 799373 | 799668 |
| exon | 799851 | 800000 |
| exon | 800381 | 800428 |
| exon | 801046 | 801122 |
| exon | 801420 | 801522 |
| exon | 803620 | 803701 |
| exon | 803845 | 803920 |
| CDS | 799468 | 799668 |
| CDS | 799851 | 800000 |
| CDS | 800381 | 800428 |
| CDS | 801046 | 801122 |
| CDS | 801420 | 801522 |
| CDS | 803620 | 803701 |
| CDS | 803845 | 803903 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000791 | condensin_complex GT1 GlycosylTransferases ferric iron binding, mitotic_chromosome_condensation iron-sulfur cluster assembly, binding, protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00201.17 | UDPGT | 102 | 182 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016758 | transferase activity, transferring hexosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.