PH01000297G0040's details annotation
1.Annotation
ICBR annotation: notchless protein, putative, expressed
Blast result AT5G52820 : 0.00E+00
Blast annotation: WD-40 repeat family protein / notchless protein, putative
2.Location
Scaffold: PH01000297
Strand: +
| Region | Start | End |
| gene | 15629 | 26242 |
| mRNA | 15629 | 26242 |
| exon | 15629 | 15950 |
| exon | 16080 | 16169 |
| exon | 17554 | 17679 |
| exon | 18391 | 18518 |
| exon | 18812 | 19011 |
| exon | 19909 | 19972 |
| exon | 22999 | 23109 |
| exon | 23272 | 23409 |
| exon | 23781 | 23923 |
| exon | 23994 | 24048 |
| exon | 24462 | 24518 |
| exon | 24800 | 26242 |
| CDS | 15878 | 15950 |
| CDS | 16080 | 16169 |
| CDS | 17554 | 17679 |
| CDS | 18391 | 18518 |
| CDS | 18812 | 19011 |
| CDS | 19909 | 19972 |
| CDS | 22999 | 23109 |
| CDS | 23272 | 23409 |
| CDS | 23781 | 23923 |
| CDS | 23994 | 24048 |
| CDS | 24462 | 24518 |
| CDS | 24800 | 24964 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000712 | anion transport, regulation_of_anion_transport protein insertion into membrane, mitochondrial outer membrane, phosphopyruvate hydratase complex, voltage-gated anion channel activity, phosphopyruvate hydratase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 48 | 85 |
| PF00400.31 | WD40 | 90 | 127 |
| PF00400.31 | WD40 | 136 | 175 |
| PF00400.31 | WD40 | 179 | 215 |
| PF00400.31 | WD40 | 220 | 293 |
| PF00400.31 | WD40 | 303 | 337 |
| PF00400.31 | WD40 | 342 | 379 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.