PH01000298G0800's details annotation
1.Annotation
ICBR annotation: GTP binding protein, putative, expressed
Blast result AT5G46070 : 1.20E-94
Blast annotation: Guanylate-binding family protein
2.Location
Scaffold: PH01000298
Strand: +
| Region | Start | End |
| gene | 582865 | 593139 |
| mRNA | 582865 | 593139 |
| exon | 582865 | 584949 |
| exon | 589940 | 590101 |
| exon | 590927 | 590992 |
| exon | 591173 | 591316 |
| exon | 591485 | 591598 |
| exon | 591728 | 591829 |
| exon | 592007 | 592077 |
| exon | 592715 | 592751 |
| exon | 592876 | 593139 |
| CDS | 584761 | 584949 |
| CDS | 589940 | 590101 |
| CDS | 590927 | 590992 |
| CDS | 591173 | 591316 |
| CDS | 591485 | 591598 |
| CDS | 591728 | 591829 |
| CDS | 592007 | 592077 |
| CDS | 592715 | 592751 |
| CDS | 592876 | 592965 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02263.18 | GBP | 61 | 267 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.