PH01000298G0820's details annotation
1.Annotation
ICBR annotation: GTP binding protein, putative, expressed
Blast result AT5G46070 : 6.00E-59
Blast annotation: Guanylate-binding family protein
2.Location
Scaffold: PH01000298
Strand: +
| Region | Start | End |
| gene | 603248 | 609278 |
| mRNA | 603248 | 609278 |
| exon | 603248 | 606227 |
| exon | 606765 | 607145 |
| exon | 607238 | 607315 |
| exon | 607424 | 607492 |
| exon | 607653 | 609278 |
| CDS | 606048 | 606227 |
| CDS | 606765 | 607145 |
| CDS | 607238 | 607315 |
| CDS | 607424 | 607492 |
| CDS | 607653 | 608390 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02841.13 | GBP_C | 140 | 238 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.