PH01000298G0910's details annotation
1.Annotation
ICBR annotation: DDT, putative, expressed
Blast result AT5G44180 : 0.00E+00
Blast annotation: Homeodomain-like transcriptional regulator
2.Location
Scaffold: PH01000298
Strand: +
| Region | Start | End |
| gene | 657518 | 671374 |
| mRNA | 657518 | 671374 |
| exon | 657518 | 657850 |
| exon | 657977 | 658456 |
| exon | 658832 | 658908 |
| exon | 660362 | 660862 |
| exon | 660955 | 661047 |
| exon | 661123 | 661287 |
| exon | 661503 | 661538 |
| exon | 661630 | 661852 |
| exon | 662583 | 662683 |
| exon | 663107 | 663193 |
| exon | 663658 | 663810 |
| exon | 663918 | 664073 |
| exon | 665348 | 665557 |
| exon | 665657 | 666364 |
| exon | 666561 | 666974 |
| exon | 667198 | 667251 |
| exon | 667876 | 668496 |
| exon | 668594 | 668698 |
| exon | 669318 | 669581 |
| exon | 669763 | 671374 |
| CDS | 657667 | 657850 |
| CDS | 657977 | 658456 |
| CDS | 658832 | 658908 |
| CDS | 660362 | 660862 |
| CDS | 660955 | 661047 |
| CDS | 661123 | 661287 |
| CDS | 661503 | 661538 |
| CDS | 661630 | 661852 |
| CDS | 662583 | 662683 |
| CDS | 663107 | 663193 |
| CDS | 663658 | 663810 |
| CDS | 663918 | 664073 |
| CDS | 665348 | 665557 |
| CDS | 665657 | 666364 |
| CDS | 666561 | 666974 |
| CDS | 667198 | 667251 |
| CDS | 667876 | 668496 |
| CDS | 668594 | 668698 |
| CDS | 669318 | 669581 |
| CDS | 669763 | 670554 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-other |
| Transcription_Regulator(from PlantTFDB) | HB-other |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 44 | 98 |
| PF02791.16 | DDT | 614 | 668 |
| PF05066.12 | HARE-HTH | 794 | 861 |
| PF15612.5 | WHIM1 | 1016 | 1058 |
| PF15613.5 | WSD | 1150 | 1240 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.