PH01000299G0200's details annotation
1.Annotation
ICBR annotation: cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed
Blast result AT3G27240 : 7.00E-132
Blast annotation: Cytochrome C1 family
2.Location
Scaffold: PH01000299
Strand: +
| Region | Start | End |
| gene | 139487 | 142947 |
| mRNA | 139487 | 142947 |
| exon | 139487 | 139825 |
| exon | 140229 | 140306 |
| exon | 140870 | 141499 |
| exon | 141655 | 142947 |
| CDS | 139766 | 139825 |
| CDS | 140229 | 140306 |
| CDS | 140870 | 141499 |
| CDS | 141655 | 142356 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02167.14 | Cytochrom_C1 | 75 | 291 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | ubiquinol-cytochrome c reductase cytochrome c1 subuni[EC:1.10.2.2] | ko00190 | K00413 |
| Nitrogen metabolism | ubiquinol-cytochrome c reductase cytochrome c1 subuni[EC:1.10.2.2] | ko00910 | K00413 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0009055 | electron carrier activity |
| GO:0020037 | heme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.