PH01000299G0320's details annotation
1.Annotation
ICBR annotation: low molecular weight protein-tyrosine-phosphatase slr0328, putative, expressed
Blast result AT3G44620 : 2.80E-24
Blast annotation: protein tyrosine phosphatases;protein tyrosine phosphatases
2.Location
Scaffold: PH01000299
Strand: +
| Region | Start | End |
| gene | 182433 | 185223 |
| mRNA | 182433 | 185223 |
| exon | 182433 | 183321 |
| exon | 184498 | 184544 |
| exon | 184698 | 184994 |
| exon | 185044 | 185223 |
| CDS | 182997 | 183321 |
| CDS | 184498 | 184544 |
| CDS | 184698 | 184994 |
| CDS | 185044 | 185148 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01451.20 | LMWPc | 103 | 128 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004725 | protein tyrosine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.