Annotation of co-expression genes

PH01000299G0360's details annotation

1.Annotation

ICBR annotation: peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed

Blast result AT3G44600 : 0.00E+00
Blast annotation: cyclophilin71

2.Location

Scaffold: PH01000299
Strand: +

RegionStartEnd
gene202003207650
mRNA202003207650
exon202003203052
exon203139203224
exon203549203637
exon203806204045
exon204140204261
exon204876204951
exon205369205512
exon205560205736
exon206127206344
exon206497206629
exon206788207011
exon207260207413
exon207509207650
CDS202811203052
CDS203139203224
CDS203549203637
CDS203806204045
CDS204140204261
CDS204876204951
CDS205369205512
CDS205560205736
CDS206127206344
CDS206497206629
CDS206788207011
CDS207260207413
CDS207509207592

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001459protein binding,
protein folding,
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
Nucleotide_excision_repair
RNA_degradation
Ubiquitin_mediated_proteolysis
coexpression networkCFinderM001741protein folding,
Nucleotide_excision_repair
mRNA_surveillance_pathway
Ubiquitin_mediated_proteolysis
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
coexpression networkCFinderM001777Ubiquitin_mediated_proteolysis
protein folding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00400.31WD4088116
PF00400.31WD40126160
PF00160.20Pro_isomerase510659

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0005515protein binding
GO:0006457protein folding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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