Annotation of co-expression genes

PH01000299G1040's details annotation

1.Annotation

ICBR annotation: homeodomain protein, putative, expressed

Blast result AT2G16400 : 1.50E-96
Blast annotation: BEL1-like homeodomain 7

2.Location

Scaffold: PH01000299
Strand: +

RegionStartEnd
gene687697689978
mRNA687697689978
exon687697688581
exon688719689098
exon689182689242
exon689353689978
CDS687889688581
CDS688719689098
CDS689182689242
CDS689353689958

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001225Valine,_leucine_and_isoleucine_degradation
TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
beta-Alanine_metabolism
Propanoate_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)HB-BELL
Transcription_Regulator(from PlantTFDB)TALE

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07526.10POX146281
PF05920.10Homeobox_KN350389

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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