PH01000300G0580's details annotation
1.Annotation
ICBR annotation: gamma-soluble NSF attachment protein, putative, expressed
Blast result AT4G20410 : 6.10E-83
Blast annotation: gamma-soluble NSF attachment protein
2.Location
Scaffold: PH01000300
Strand: -
| Region | Start | End |
| gene | 366286 | 374404 |
| mRNA | 366286 | 374404 |
| exon | 366286 | 366991 |
| exon | 367760 | 367889 |
| exon | 368041 | 368120 |
| exon | 368378 | 368456 |
| exon | 369499 | 369636 |
| exon | 370007 | 370144 |
| exon | 370214 | 370328 |
| exon | 370631 | 370698 |
| exon | 371923 | 372159 |
| exon | 372375 | 374404 |
| CDS | 366884 | 366991 |
| CDS | 367760 | 367889 |
| CDS | 368041 | 368120 |
| CDS | 368378 | 368456 |
| CDS | 369499 | 369636 |
| CDS | 370007 | 370144 |
| CDS | 370214 | 370328 |
| CDS | 370631 | 370698 |
| CDS | 371923 | 372159 |
| CDS | 372375 | 372433 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000763 | retromer complex, Golgi_transport_complex intra-Golgi vesicle-mediated transport, vacuolar transport, RNA-dependent DNA replication, |
| coexpression network | CFinderM000972 | solute:hydrogen antiporter activity, GT31 GlycosylTransferases cation transport, rRNA methyltransferase activity, magnesium_ion_transport rRNA processing, transmembrane transport, magnesium_ion_transmembrane_transporter_activity galactosyltransferase activity, protein glycosylation, |
| coexpression network | CFinderM001616 | intra-Golgi vesicle-mediated transport, Golgi organization, Golgi_transport_complex mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14938.5 | SNAP | 88 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.