PH01000300G1100's details annotation
1.Annotation
ICBR annotation: SIT4 phosphatase-associated protein domain containing protein, expressed
Blast result AT1G07990 : 5.20E-73
Blast annotation: SIT4 phosphatase-associated family protein
2.Location
Scaffold: PH01000300
Strand: +
| Region | Start | End |
| gene | 714768 | 717865 |
| mRNA | 714768 | 717865 |
| exon | 714768 | 714898 |
| exon | 715484 | 715522 |
| exon | 715611 | 715714 |
| exon | 716359 | 716445 |
| exon | 716531 | 716606 |
| exon | 716710 | 716784 |
| exon | 716904 | 716957 |
| exon | 717431 | 717490 |
| exon | 717725 | 717865 |
| CDS | 714896 | 714898 |
| CDS | 715484 | 715522 |
| CDS | 715611 | 715714 |
| CDS | 716359 | 716445 |
| CDS | 716531 | 716606 |
| CDS | 716710 | 716784 |
| CDS | 716904 | 716957 |
| CDS | 717431 | 717490 |
| CDS | 717725 | 717865 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000572 | ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04499.14 | SAPS | 132 | 205 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.