PH01000305G0030's details annotation
1.Annotation
ICBR annotation: transcription factor BTF3, putative, expressed
Blast result AT1G73230 : 2.80E-61
Blast annotation: Nascent polypeptide-associated complex NAC
2.Location
Scaffold: PH01000305
Strand: +
| Region | Start | End |
| gene | 15359 | 18234 |
| mRNA | 15359 | 18234 |
| exon | 15359 | 15892 |
| exon | 16419 | 16486 |
| exon | 17023 | 17171 |
| exon | 17602 | 17640 |
| exon | 17858 | 18234 |
| CDS | 15824 | 15892 |
| CDS | 16419 | 16486 |
| CDS | 17023 | 17171 |
| CDS | 17602 | 17640 |
| CDS | 17858 | 18039 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000607 | intracellular, Ribosome translation, structural constituent of ribosome, phosphoribosyl-ATP diphosphatase activity, ARID Transcription_Regulator(from iTAK) histidine biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01849.17 | NAC | 36 | 91 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.