PH01000305G0200's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT2G45530 : 6.70E-50
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000305
Strand: +
| Region | Start | End |
| gene | 146849 | 156936 |
| mRNA | 146849 | 156936 |
| exon | 146849 | 150159 |
| exon | 152548 | 152682 |
| exon | 152755 | 152797 |
| exon | 153142 | 153204 |
| exon | 153374 | 153488 |
| exon | 153803 | 153908 |
| exon | 154383 | 154494 |
| exon | 154801 | 154883 |
| exon | 155108 | 155225 |
| exon | 155724 | 155849 |
| exon | 156175 | 156936 |
| CDS | 149864 | 150159 |
| CDS | 152548 | 152682 |
| CDS | 152755 | 152797 |
| CDS | 153142 | 153204 |
| CDS | 153374 | 153488 |
| CDS | 153803 | 153908 |
| CDS | 154383 | 154494 |
| CDS | 154801 | 154883 |
| CDS | 155108 | 155225 |
| CDS | 155724 | 155849 |
| CDS | 156175 | 156195 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12906.6 | RINGv | 98 | 143 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.