PH01000305G0590's details annotation
1.Annotation
ICBR annotation: START domain containing protein, expressed
Blast result AT5G60690 : 0.00E+00
Blast annotation: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
2.Location
Scaffold: PH01000305
Strand: -
| Region | Start | End |
| gene | 388406 | 397256 |
| mRNA | 388406 | 397256 |
| exon | 388406 | 389424 |
| exon | 390317 | 390466 |
| exon | 390671 | 390776 |
| exon | 390973 | 391301 |
| exon | 391635 | 391769 |
| exon | 391993 | 392073 |
| exon | 392475 | 392663 |
| exon | 392894 | 393074 |
| exon | 393164 | 393306 |
| exon | 393467 | 393541 |
| exon | 393642 | 393797 |
| exon | 393898 | 393981 |
| exon | 394093 | 394206 |
| exon | 394636 | 394731 |
| exon | 394818 | 394908 |
| exon | 395013 | 395092 |
| exon | 395198 | 395357 |
| exon | 395675 | 397256 |
| CDS | 389278 | 389424 |
| CDS | 390317 | 390466 |
| CDS | 390671 | 390776 |
| CDS | 390973 | 391301 |
| CDS | 391635 | 391769 |
| CDS | 391993 | 392073 |
| CDS | 392475 | 392663 |
| CDS | 392894 | 393074 |
| CDS | 393164 | 393306 |
| CDS | 393467 | 393541 |
| CDS | 393642 | 393797 |
| CDS | 393898 | 393981 |
| CDS | 394093 | 394206 |
| CDS | 394636 | 394731 |
| CDS | 394818 | 394908 |
| CDS | 395013 | 395092 |
| CDS | 395198 | 395357 |
| CDS | 395675 | 395910 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | phe-miR166 | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-HD-ZIP |
| Transcription_Regulator(from PlantTFDB) | HD-ZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00046.28 | Homeobox | 27 | 84 |
| PF01852.18 | START | 163 | 367 |
| PF08670.10 | MEKHLA | 707 | 849 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.