PH01000306G0540's details annotation
1.Annotation
ICBR annotation: protein of unknown function DUF1675 domain containing protein, expressed
Blast result AT3G29575 : 6.80E-44
Blast annotation: ABI five binding protein 3
2.Location
Scaffold: PH01000306
Strand: -
| Region | Start | End |
| gene | 334074 | 337864 |
| mRNA | 334074 | 337864 |
| exon | 334074 | 334741 |
| exon | 335635 | 337864 |
| CDS | 334314 | 334741 |
| CDS | 335635 | 336112 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001091 | DBP Transcription_Regulator(from iTAK) protein dephosphorylation, nucleosome assembly, |
| coexpression network | CFinderM001170 | DBP Transcription_Regulator(from iTAK) cellular protein metabolic process, protein dephosphorylation, Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07897.10 | EAR | 24 | 62 |
| PF16136.4 | NINJA_B | 81 | 125 |
| PF16135.4 | Jas | 225 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.