PH01000308G0850's details annotation
1.Annotation
ICBR annotation: FAR1 family protein, expressed
Blast result AT3G06250 : 5.30E-38
Blast annotation: FAR1-related sequence 7
2.Location
Scaffold: PH01000308
Strand: +
| Region | Start | End |
| gene | 574757 | 579584 |
| mRNA | 574757 | 579584 |
| exon | 574757 | 577318 |
| exon | 577407 | 577486 |
| exon | 578845 | 579584 |
| CDS | 575890 | 577318 |
| CDS | 577407 | 577486 |
| CDS | 578845 | 579426 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) RNA_degradation membrane, |
| coexpression network | CFinderM001568 | FAR1 Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-XV (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | FAR1 |
| Transcription_Regulator(from PlantTFDB) | FAR1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03101.14 | FAR1 | 74 | 164 |
| PF03101.14 | FAR1 | 212 | 304 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.