PH01000308G1050's details annotation
1.Annotation
ICBR annotation: pleckstrin homology domain-containing protein-related taxo, putative, expressed
Blast result AT4G24580 : 2.00E-109
Blast annotation: Rho GTPase activation protein (RhoGAP) with PH domain
2.Location
Scaffold: PH01000308
Strand: -
| Region | Start | End |
| gene | 723257 | 729481 |
| mRNA | 723257 | 729481 |
| exon | 723257 | 724549 |
| exon | 724658 | 724901 |
| exon | 725117 | 725201 |
| exon | 725403 | 725472 |
| exon | 725567 | 725622 |
| exon | 725903 | 725980 |
| exon | 726157 | 726261 |
| exon | 727129 | 727273 |
| exon | 727530 | 727608 |
| exon | 727696 | 727763 |
| exon | 729299 | 729481 |
| CDS | 724286 | 724549 |
| CDS | 724658 | 724901 |
| CDS | 725117 | 725201 |
| CDS | 725403 | 725472 |
| CDS | 725567 | 725622 |
| CDS | 725903 | 725980 |
| CDS | 726157 | 726261 |
| CDS | 727129 | 727273 |
| CDS | 727530 | 727608 |
| CDS | 727696 | 727763 |
| CDS | 729299 | 729304 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00620.26 | RhoGAP | 121 | 264 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005543 | phospholipid binding |
| GO:0005622 | intracellular |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.