PH01000309G0360's details annotation
1.Annotation
ICBR annotation: no apical meristem protein, putative, expressed
Blast result AT5G22380 : 8.00E-53
Blast annotation: NAC domain containing protein 90
2.Location
Scaffold: PH01000309
Strand: +
| Region | Start | End |
| gene | 265670 | 267893 |
| mRNA | 265670 | 267893 |
| exon | 265670 | 266097 |
| exon | 266187 | 266530 |
| exon | 266965 | 267893 |
| CDS | 265941 | 266097 |
| CDS | 266187 | 266530 |
| CDS | 266965 | 267234 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000556 | regulation of transcription, DNA-dependent, protein phosphorylation, |
| coexpression network | CFinderM000968 | protein phosphorylation, protein serine/threonine kinase activity, transferase activity, transferring phosphorus-containing groups, protein kinase activity, regulation of transcription, DNA-dependent, ATP binding, RLK-Pelle_LRR-I-1 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NAC |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02365.14 | NAM | 6 | 137 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.