PH01000309G0940's details annotation
1.Annotation
ICBR annotation: helix-loop-helix DNA-binding protein, putative, expressed
Blast result AT2G27230 : 7.50E-57
Blast annotation: transcription factor-related
2.Location
Scaffold: PH01000309
Strand: +
| Region | Start | End |
| gene | 597361 | 604345 |
| mRNA | 597361 | 604345 |
| exon | 597361 | 597893 |
| exon | 598113 | 598343 |
| exon | 598463 | 598544 |
| exon | 598941 | 598982 |
| exon | 599070 | 599129 |
| exon | 599766 | 599807 |
| exon | 599895 | 599954 |
| exon | 600473 | 602137 |
| exon | 602248 | 602349 |
| exon | 603103 | 603243 |
| exon | 603333 | 603458 |
| exon | 603725 | 603841 |
| exon | 603896 | 603949 |
| exon | 604193 | 604345 |
| CDS | 597784 | 597893 |
| CDS | 598113 | 598343 |
| CDS | 598463 | 598544 |
| CDS | 598941 | 598982 |
| CDS | 599070 | 599129 |
| CDS | 599766 | 599807 |
| CDS | 599895 | 599954 |
| CDS | 600473 | 602137 |
| CDS | 602248 | 602349 |
| CDS | 603103 | 603243 |
| CDS | 603333 | 603458 |
| CDS | 603725 | 603841 |
| CDS | 603896 | 603949 |
| CDS | 604193 | 604312 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14215.5 | bHLH-MYC_N | 7 | 177 |
| PF14215.5 | bHLH-MYC_N | 185 | 224 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.