PH01000312G0670's details annotation
1.Annotation
ICBR annotation: beta-galactosidase, putative, expressed
Blast result AT4G36360 : 0.00E+00
Blast annotation: beta-galactosidase 3
2.Location
Scaffold: PH01000312
Strand: -
| Region | Start | End |
| gene | 473450 | 485647 |
| mRNA | 473450 | 485647 |
| exon | 473450 | 474151 |
| exon | 474346 | 474679 |
| exon | 474891 | 475093 |
| exon | 475176 | 475289 |
| exon | 475374 | 475484 |
| exon | 475572 | 475681 |
| exon | 475756 | 475865 |
| exon | 476068 | 476246 |
| exon | 476361 | 476522 |
| exon | 476609 | 476746 |
| exon | 476913 | 477053 |
| exon | 477097 | 477202 |
| exon | 477353 | 477441 |
| exon | 477867 | 478015 |
| exon | 478343 | 478439 |
| exon | 478527 | 478593 |
| exon | 478806 | 478837 |
| exon | 478931 | 479026 |
| exon | 483562 | 483606 |
| exon | 484622 | 484717 |
| exon | 485298 | 485647 |
| CDS | 474032 | 474151 |
| CDS | 474346 | 474679 |
| CDS | 474891 | 475093 |
| CDS | 475176 | 475289 |
| CDS | 475374 | 475484 |
| CDS | 475572 | 475681 |
| CDS | 475756 | 475865 |
| CDS | 476068 | 476246 |
| CDS | 476361 | 476522 |
| CDS | 476609 | 476746 |
| CDS | 476913 | 477053 |
| CDS | 477097 | 477202 |
| CDS | 477353 | 477441 |
| CDS | 477867 | 478015 |
| CDS | 478343 | 478439 |
| CDS | 478527 | 478593 |
| CDS | 478806 | 478837 |
| CDS | 478931 | 479026 |
| CDS | 483562 | 483606 |
| CDS | 484622 | 484717 |
| CDS | 485298 | 485420 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000694 | IWS1 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01301.18 | Glyco_hydro_35 | 89 | 130 |
| PF01301.18 | Glyco_hydro_35 | 132 | 301 |
| PF02140.17 | Gal_Lectin | 792 | 869 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.