PH01000315G0430's details annotation
1.Annotation
ICBR annotation: initiation factor 2 subunit family domain containing protein, expressed
Blast result AT2G05830 : 7.00E-134
Blast annotation: NagB/RpiA/CoA transferase-like superfamily protein
2.Location
Scaffold: PH01000315
Strand: +
| Region | Start | End |
| gene | 303019 | 306706 |
| mRNA | 303019 | 306706 |
| exon | 303019 | 303213 |
| exon | 303305 | 303360 |
| exon | 303768 | 303923 |
| exon | 304091 | 304190 |
| exon | 305254 | 305396 |
| exon | 305509 | 305614 |
| exon | 305902 | 306040 |
| exon | 306123 | 306391 |
| exon | 306521 | 306706 |
| CDS | 303148 | 303213 |
| CDS | 303305 | 303360 |
| CDS | 303768 | 303923 |
| CDS | 304091 | 304190 |
| CDS | 305254 | 305396 |
| CDS | 305509 | 305614 |
| CDS | 305902 | 306040 |
| CDS | 306123 | 306391 |
| CDS | 306521 | 306589 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01008.16 | IF-2B | 49 | 349 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cysteine and methionine metabolism | methylthioribose-1-phosphate isomerase [EC:5.3.1.23] | ko00270 | K08963 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0044237 | cellular metabolic process |
| GO:0044249 | cellular biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.