Annotation of co-expression genes

PH01000316G0270's details annotation

1.Annotation

ICBR annotation: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed

Blast result AT4G21150 : 0.00E+00
Blast annotation: ribophorin II (RPN2) family protein

2.Location

Scaffold: PH01000316
Strand: -

RegionStartEnd
gene140030147495
mRNA140030147495
exon140030140568
exon140628140768
exon140881141105
exon141182141262
exon141949142060
exon142446142594
exon142681142770
exon142893142994
exon143475143544
exon143618143766
exon143852143979
exon144344144398
exon145784145848
exon146121146190
exon146296146352
exon146475146564
exon146612146846
exon147024147495
CDS140452140568
CDS140628140768
CDS140881141105
CDS141182141262
CDS141949142060
CDS142446142594
CDS142681142770
CDS142893142994
CDS143475143544
CDS143618143766
CDS143852143979
CDS144344144398
CDS145784145848
CDS146121146190
CDS146296146352
CDS146475146564
CDS146612146846
CDS147024147175

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05817.13Ribophorin_II9514
PF05817.13Ribophorin_II509686

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
N-Glycan biosynthesisoligosaccharyltransferase complex subunit delta (ribophorin II)ko00510K12667
Various types of N-glycan biosynthesisoligosaccharyltransferase complex subunit delta (ribophorin II)ko00513K12667
Protein processing in endoplasmic reticulumoligosaccharyltransferase complex subunit delta (ribophorin II)ko04141K12667

10.Gene Ontology

GO AccessionGO Annotation
GO:0004579dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005789endoplasmic reticulum membrane
GO:0008250oligosaccharyltransferase complex
GO:0018279protein N-linked glycosylation via asparagine

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.