Annotation of co-expression genes

PH01000317G0730's details annotation

1.Annotation

ICBR annotation: pectinesterase, putative, expressed

Blast result AT5G09760 : 3.00E-150
Blast annotation: Plant invertase/pectin methylesterase inhibitor superfamily

2.Location

Scaffold: PH01000317
Strand: +

RegionStartEnd
gene471121476679
mRNA471121476679
exon471121472404
exon475916476679
CDS471480472404
CDS475916476607

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000997oligosaccharide metabolic process,
GH63 Glycoside_Hydrolases
cell wall,
cell wall modification,
mannosyl-oligosaccharide glucosidase activity,
CE8 Carbohydrate_Esterases
N-Glycan_biosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Carbohydrate_EsterasesCE8

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01095.18Pectinesterase228531

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004857enzyme inhibitor activity
GO:0005618cell wall
GO:0030599pectinesterase activity
GO:0042545cell wall modification

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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