PH01000317G0970's details annotation
1.Annotation
ICBR annotation: 4,5-DOPA dioxygenase extradiol, putative, expressed
Blast result AT4G15093 : 4.00E-95
Blast annotation: catalytic LigB subunit of aromatic ring-opening dioxygenase family
2.Location
Scaffold: PH01000317
Strand: +
| Region | Start | End |
| gene | 627557 | 631861 |
| mRNA | 627557 | 631861 |
| exon | 627557 | 628295 |
| exon | 630916 | 631286 |
| exon | 631415 | 631861 |
| CDS | 627933 | 628295 |
| CDS | 630916 | 631286 |
| CDS | 631415 | 631607 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02900.17 | LigB | 57 | 315 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Betalain biosynthesis | 4,5-DOPA dioxygenase extradiol [EC:1.13.11.-] | ko00965 | K15777 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006725 | cellular aromatic compound metabolic process |
| GO:0008198 | ferrous iron binding |
| GO:0008270 | zinc ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.