PH01000318G0140's details annotation
1.Annotation
ICBR annotation: membrane associated DUF588 domain containing protein, putative, expressed
Blast result AT1G17200 : 7.60E-54
Blast annotation: Uncharacterised protein family (UPF0497)
2.Location
Scaffold: PH01000318
Strand: -
| Region | Start | End |
| gene | 129708 | 132780 |
| mRNA | 129708 | 132780 |
| exon | 129708 | 130485 |
| exon | 130984 | 131101 |
| exon | 131235 | 132780 |
| CDS | 130210 | 130485 |
| CDS | 130984 | 131101 |
| CDS | 131235 | 131467 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000862 | DBP Transcription_Regulator(from iTAK) Golgi stack, GPI-anchor transamidase complex, |
| coexpression network | CFinderM001725 | cellular protein metabolic process, MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001821 | protein processing, mRNA_surveillance_pathway protein binding, |
| coexpression network | CFinderM001822 | protein processing, PHD Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04535.11 | DUF588 | 34 | 173 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.