PH01000320G0610's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolase, family 31, putative, expressed
Blast result AT1G68560 : 0.00E+00
Blast annotation: alpha-xylosidase 1
2.Location
Scaffold: PH01000320
Strand: -
| Region | Start | End |
| gene | 458365 | 463946 |
| mRNA | 458365 | 463946 |
| exon | 458365 | 460439 |
| exon | 461704 | 462362 |
| exon | 462827 | 463946 |
| CDS | 458551 | 460439 |
| CDS | 461704 | 462362 |
| CDS | 462827 | 463074 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH31 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16863.4 | NtCtMGAM_N | 58 | 181 |
| PF13802.5 | Gal_mutarotas_2 | 184 | 252 |
| PF01055.25 | Glyco_hydro_31 | 273 | 765 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.