PH01000320G0680's details annotation
1.Annotation
ICBR annotation: cation efflux family protein, putative, expressed
Blast result AT1G16310 : 1.00E-138
Blast annotation: Cation efflux family protein
2.Location
Scaffold: PH01000320
Strand: +
| Region | Start | End |
| gene | 536649 | 543510 |
| mRNA | 536649 | 543510 |
| exon | 536649 | 536823 |
| exon | 538583 | 538698 |
| exon | 538842 | 539087 |
| exon | 539395 | 539475 |
| exon | 539571 | 539801 |
| exon | 539888 | 540226 |
| exon | 541166 | 541258 |
| exon | 541693 | 542226 |
| exon | 542422 | 543510 |
| CDS | 536685 | 536823 |
| CDS | 538583 | 538698 |
| CDS | 538842 | 539087 |
| CDS | 539395 | 539475 |
| CDS | 539571 | 539801 |
| CDS | 539888 | 540226 |
| CDS | 541166 | 541258 |
| CDS | 541693 | 542226 |
| CDS | 542422 | 543165 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01545.20 | Cation_efflux | 102 | 291 |
| PF16916.4 | ZT_dimer | 301 | 372 |
| PF14111.5 | DUF4283 | 586 | 657 |
| PF14392.5 | zf-CCHC_4 | 660 | 704 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0008324 | cation transmembrane transporter activity |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.