PH01000321G0370's details annotation
1.Annotation
ICBR annotation: hydrolase, alpha/beta fold family protein, putative, expressed
Blast result AT2G36290 : 3.20E-87
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01000321
Strand: +
| Region | Start | End |
| gene | 231573 | 236083 |
| mRNA | 231573 | 236083 |
| exon | 231573 | 232224 |
| exon | 233509 | 233832 |
| exon | 234415 | 234626 |
| exon | 234729 | 236083 |
| CDS | 231931 | 232224 |
| CDS | 233509 | 233832 |
| CDS | 234415 | 234626 |
| CDS | 234729 | 235398 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000906 | HSF Transcription_Regulator(from PlantTFDB) protein ADP-ribosylation, dephosphorylation, protein methylation, Base_excision_repair |
| coexpression network | CFinderM001539 | protein methylation, |
| coexpression network | CFinderM001765 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) Steroid_biosynthesis oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, |
| coexpression network | CFinderM001885 | Base_excision_repair NAD+ ADP-ribosyltransferase activity, GT29 GlycosylTransferases protein ADP-ribosylation, sialyltransferase activity, protein ubiquitination, protein glycosylation, |
| coexpression network | CFinderM001886 | Steroid_biosynthesis ubiquitin ligase complex, sterol_24-C-methyltransferase_activity dephosphorylation, steroid biosynthetic process, mRNA_surveillance_pathway protein ubiquitination, protein dephosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00561.19 | Abhydrolase_1 | 188 | 314 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.