PH01000321G0550's details annotation
1.Annotation
ICBR annotation: CCB2, putative, expressed
Blast result AT5G52110 : 1.50E-48
Blast annotation: Protein of unknown function (DUF2930)
2.Location
Scaffold: PH01000321
Strand: +
| Region | Start | End |
| gene | 395689 | 400546 |
| mRNA | 395689 | 400546 |
| exon | 395689 | 397227 |
| exon | 397549 | 397620 |
| exon | 397727 | 397870 |
| exon | 398450 | 398603 |
| exon | 399135 | 400546 |
| CDS | 397045 | 397227 |
| CDS | 397549 | 397620 |
| CDS | 397727 | 397870 |
| CDS | 398450 | 398603 |
| CDS | 399135 | 399331 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11152.7 | CCB2_CCB4 | 52 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.