Annotation of co-expression genes

PH01000322G0160's details annotation

1.Annotation

ICBR annotation: 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed

Blast result AT1G07110 : 1.00E-173
Blast annotation: fructose-2,6-bisphosphatase

2.Location

Scaffold: PH01000322
Strand: +

RegionStartEnd
gene7671287502
mRNA7671287502
exon7671277046
exon7712577188
exon7758177879
exon7797578029
exon7894479209
exon8005780341
exon8067980771
exon8142781525
exon8162281651
exon8189481947
exon8240882461
exon8253282609
exon8399284083
exon8416384220
exon8425984375
exon8644586467
exon8666086735
exon8681086872
exon8696287502
CDS7690077046
CDS7712577188
CDS7758177879
CDS7797578029
CDS7894479209
CDS8005780341
CDS8067980771
CDS8142781525
CDS8162281651
CDS8189481947
CDS8240882461
CDS8253282609
CDS8399284083
CDS8416384220
CDS8425984375
CDS8644586467
CDS8666086735
CDS8681086872
CDS8696287159

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00686.18CBM_2034103
PF01591.176PF2K391578
PF00300.21His_Phos_1596682

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Fructose and mannose metabolism6-phosphofructo-2-kinase / fructose-2,6-bisphosphatase [EC:2.7.1.-]ko00051K01103

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:00038736-phosphofructo-2-kinase activity
GO:0004331fructose-2,6-bisphosphate 2-phosphatase activity
GO:0005524ATP binding
GO:0006000fructose metabolic process
GO:0006003fructose 2,6-bisphosphate metabolic process
GO:0030246carbohydrate binding
GO:2001070starch binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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