PH01000322G0310's details annotation
1.Annotation
ICBR annotation: CHCH domain containing protein, expressed
Blast result AT3G06310 : 2.50E-45
Blast annotation: Cox19-like CHCH family protein
2.Location
Scaffold: PH01000322
Strand: +
| Region | Start | End |
| gene | 163045 | 164694 |
| mRNA | 163045 | 164694 |
| exon | 163045 | 164694 |
| CDS | 163923 | 164123 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000009 | ubiquitin thiolesterase activity, Oxidative_phosphorylation ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000045 | RLK-Pelle_LRR-VII-1 (from iTAK) |
| coexpression network | CFinderM000657 | vesicle docking involved in exocytosis, Oxidative_phosphorylation Endocytosis nucleosome, vesicle-mediated transport, nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06747.12 | CHCH | 74 | 106 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 8 [EC:1.6.5.3;EC:1.6.99.3] | ko00190 | K03952 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.