PH01000323G0160's details annotation
1.Annotation
ICBR annotation: methyladenine glycosylase, putative, expressed
Blast result AT1G13635 : 3.00E-77
Blast annotation: DNA glycosylase superfamily protein
2.Location
Scaffold: PH01000323
Strand: +
| Region | Start | End |
| gene | 126333 | 130395 |
| mRNA | 126333 | 130395 |
| exon | 126333 | 126827 |
| exon | 127388 | 127445 |
| exon | 127550 | 127633 |
| exon | 127738 | 127840 |
| exon | 128100 | 130395 |
| CDS | 126419 | 126827 |
| CDS | 127388 | 127445 |
| CDS | 127550 | 127633 |
| CDS | 127738 | 127840 |
| CDS | 128100 | 128390 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03352.12 | Adenine_glyco | 135 | 308 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Base excision repair | DNA-3-methyladenine glycosylase I [EC:3.2.2.20] | ko03410 | K01246 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006281 | DNA repair |
| GO:0006284 | base-excision repair |
| GO:0008725 | DNA-3-methyladenine glycosylase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.