PH01000324G0500's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G25870 : 1.70E-79
Blast annotation: haloacid dehalogenase-like hydrolase family protein
2.Location
Scaffold: PH01000324
Strand: -
| Region | Start | End |
| gene | 351620 | 357363 |
| mRNA | 351620 | 357363 |
| exon | 351620 | 351796 |
| exon | 352038 | 352088 |
| exon | 352181 | 352300 |
| exon | 352669 | 352740 |
| exon | 354163 | 354242 |
| exon | 354538 | 354712 |
| exon | 355240 | 355335 |
| exon | 355385 | 355672 |
| exon | 355836 | 357363 |
| CDS | 351626 | 351796 |
| CDS | 352038 | 352088 |
| CDS | 352181 | 352300 |
| CDS | 352669 | 352740 |
| CDS | 354163 | 354242 |
| CDS | 354538 | 354712 |
| CDS | 355240 | 355335 |
| CDS | 355385 | 355672 |
| CDS | 355836 | 356189 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02130.16 | UPF0054 | 150 | 279 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004222 | metalloendopeptidase activity |
| GO:0006364 | rRNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.