Annotation of co-expression genes

PH01000326G0530's details annotation

1.Annotation

ICBR annotation: aspartic proteinase oryzasin-1 precursor, putative, expressed

Blast result AT1G11910 : 7.00E-177
Blast annotation: aspartic proteinase A1

2.Location

Scaffold: PH01000326
Strand: +

RegionStartEnd
gene419152423549
mRNA419152423549
exon419152420762
exon420849420909
exon421015421109
exon421188421300
exon421396421669
exon421767421880
exon422010422074
exon422171422312
exon422407422526
exon422989423077
exon423177423549
CDS420412420762
CDS420849420909
CDS421015421109
CDS421188421300
CDS421396421669
CDS421767421880
CDS422010422074
CDS422171422312
CDS422407422526
CDS422989423077
CDS423177423261

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001706GH35 Glycoside_Hydrolases
ion transport,
coexpression networkCFinderM001709GH17 Glycoside_Hydrolases
Arginine_and_proline_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00026.22Asp82500
PF03489.16SapB_2316349
PF05184.14SapB_1375411

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004190aspartic-type endopeptidase activity
GO:0006508proteolysis
GO:0006629lipid metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.