Gene details

Annotation of co-expression genes

PH01000327G0480's details annotation

1.Annotation

ICBR annotation: alkaline phytoceramidase, putative, expressed

Blast result AT4G22330 : 1.00E-119
Blast annotation: Alkaline phytoceramidase (aPHC)

2.Location

Scaffold: PH01000327
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000755	ceramide metabolic process, tubulin complex assembly, Sphingolipid_metabolism hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, serine-type peptidase activity, microtubule,
coexpression network	CFinderM001138	AP-3_adaptor_complex ceramide metabolic process, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, Sphingolipid_metabolism phosphate-containing compound metabolic process, inorganic diphosphatase activity, protein transporter activity, Oxidative_phosphorylation membrane coat,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF05875.11	Ceramidase	9	247

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Sphingolipid metabolism	dihydroceramidase [EC:3.5.1.-]	ko00600	K04711

10.Gene Ontology

GO Accession	GO Annotation
GO:0006672	ceramide metabolic process
GO:0016021	integral to membrane
GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.