PH01000327G0570's details annotation
1.Annotation
ICBR annotation: calcium-dependent protein kinase CPK1 adapter protein 2, putative, expressed
Blast result AT2G17990 : 2.40E-85
Blast annotation: -
2.Location
Scaffold: PH01000327
Strand: -
| Region | Start | End |
| gene | 388514 | 396642 |
| mRNA | 388514 | 396642 |
| exon | 388514 | 388724 |
| exon | 388795 | 388824 |
| exon | 389538 | 389631 |
| exon | 390795 | 390972 |
| exon | 391106 | 391217 |
| exon | 392914 | 392993 |
| exon | 393365 | 393532 |
| exon | 395071 | 395923 |
| exon | 396251 | 396642 |
| CDS | 388696 | 388724 |
| CDS | 388795 | 388824 |
| CDS | 389538 | 389631 |
| CDS | 390795 | 390972 |
| CDS | 391106 | 391217 |
| CDS | 392914 | 392993 |
| CDS | 393365 | 393532 |
| CDS | 395071 | 395923 |
| CDS | 396251 | 396272 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.