Annotation of co-expression genes

PH01000327G1110's details annotation

1.Annotation

ICBR annotation: LYR motif containing protein, putative, expressed

Blast result AT4G34700 : 1.30E-46
Blast annotation: LYR family of Fe/S cluster biogenesis protein

2.Location

Scaffold: PH01000327
Strand: +

RegionStartEnd
gene771837776405
mRNA771837776405
exon771837773625
exon773713773754
exon773888773969
exon774866774921
exon775606776405
CDS773500773625
CDS773713773754
CDS773888773969
CDS774866774921
CDS775606775644

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000432TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
threonine-type endopeptidase activity,
endopeptidase activity,
peptidyl-prolyl cis-trans isomerase activity,
proteasome core complex,
proteolysis involved in cellular protein catabolic process,
Oxidative_phosphorylation
Proteasome
mRNA_surveillance_pathway

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05347.14Complex1_LYR1770

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Oxidative phosphorylationNADH dehydrogenase (ubiquinone) 1 beta subcomplex 9 [EC:1.6.5.3;EC:1.6.99.3]ko00190K03965

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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